miRBase entry: cgr-mir-31

Stem-loop cgr-mir-31


Accession
MI0020489
Description
Cricetulus griseus cgr-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31


Sequence

50740 reads, 704 reads per million, 6 experiments
ccuggagaggAGGCAAGAUGCUGGCAUAGCUGuugaacuagaaccUGCUAUGCCAACAUAUUGCCAUCuuuccuguc
...(((((((.(((((.(((.(((((((((.(((.......)))..))))))))).))).))))).)))))))....

Structure
-ccu       A     G   C         -U   ga 
    ggagagg GGCAA AUG UGGCAUAGC  Guu  a
    ||||||| ||||| ||| |||||||||  |||  c
    ccuuuCU CCGUU UAC ACCGUAUCG  caa  u
cugu       A     A   A         Uc   ga 


Annotation confidence Not enough data
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Genome context
JH001015.1: 239153-239229 [-]

Database links

Mature cgr-miR-31-5p

Accession MIMAT0023902
Description Cricetulus griseus cgr-miR-31-5p mature miRNA
Sequence 11 - AGGCAAGAUGCUGGCAUAGCUG - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-31-3p

Accession MIMAT0023903
Description Cricetulus griseus cgr-miR-31-3p mature miRNA
Sequence 46 - UGCUAUGCCAACAUAUUGCCAUC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75