Stem-loop cgr-mir-338

Accession

MI0020499

Description

Cricetulus griseus cgr-mir-338 precursor miRNA

Gene family

MIPF0000097; mir-338

Literature search

1 open access papers mention cgr-mir-338
(5 sentences)

Sequence

6401 reads, 52 reads per million, 6 experiments

gccguccuccccaacaacauccuggugcugagugauggcacaggugacUCCAGCAUCAGUGAUUUUGUUGAagagggcag
...((((((..((((((.(((((((((((((((.((.......)).))).))))))))).))).))))))..))))))..

Structure

gcc      cc      c   -         -   g  gg 
   guccuc  caacaa auc cuggugcug agu au  c
   ||||||  |||||| ||| ||||||||| ||| ||  a
   cgggag  GUUGUU UAG GACUACGAC Uca ug  c
-ga      aA      U   U         C   g  ga 

Annotation confidence Low

Genome context

JH000058.1: 2288146-2288225 [-]

Mature cgr-miR-338

• Accession: MIMAT0023918
• Description: Cricetulus griseus cgr-miR-338 mature miRNA
• Sequence: 49 - UCCAGCAUCAGUGAUUUUGUUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75