miRBase entry: cgr-mir-339

Stem-loop cgr-mir-339


Accession
MI0020500
Description
Cricetulus griseus cgr-mir-339 precursor miRNA
Gene family
MIPF0000193; mir-339


Sequence

9956 reads, 56 reads per million, 6 experiments
cagccaccgUCCCUGUCCUCCAGGAGCUCACGuaugccugccugugagcaccucgaugacagagccgguguccaccccug
....(((((.(.(((((.((.(((.(((((((((....)))..)))))).))).)).))))).).)))))..........

Structure
------cagc     U C     C  C   A      --   u 
          caccg C CUGUC UC AGG GCUCAC  Gua g
          ||||| | ||||| || ||| ||||||  |||  
          guggc g gacag ag ucc cgagug  cgu c
guccccaccu     c a     u  c   a      uc   c 


Annotation confidence High
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Genome context
JH000745.1: 169021-169100 [+]

Database links

Mature cgr-miR-339

Accession MIMAT0023919
Description Cricetulus griseus cgr-miR-339 mature miRNA
Sequence 10 - UCCCUGUCCUCCAGGAGCUCACG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75