Stem-loop cgr-mir-377

Accession

MI0020514

Description

Cricetulus griseus cgr-mir-377 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention cgr-mir-377
(1 sentences)

Sequence

6826 reads, 62 reads per million, 6 experiments

uucuggagcAGAGGUUGCCCUUGGUGAAUUCGcuuuauugauguUGAAUCACACAAAGGCAACUUUUguuugaguau
..((.((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).))...

Structure

-uu  g              C   -    A    - uuu 
   cu gagcAGAGGUUGCC UUG GUGA UUCG c   a
   || |||||||||||||| ||| |||| |||| |   u
   ga uuugUUUUCAACGG AAC CACU AAGU g   u
uau  g              A   A    -    u uag 

Annotation confidence Not enough data

Genome context

JH000884.1: 70467-70543 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cgr-mir-377

Mature cgr-miR-377-5p

• Accession: MIMAT0023941
• Description: Cricetulus griseus cgr-miR-377-5p mature miRNA
• Sequence: 10 - AGAGGUUGCCCUUGGUGAAUUCG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-377-3p

• Accession: MIMAT0023942
• Description: Cricetulus griseus cgr-miR-377-3p mature miRNA
• Sequence: 45 - UGAAUCACACAAAGGCAACUUUU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75