miRBase entry: cgr-mir-378

Stem-loop cgr-mir-378


Accession
MI0020515
Description
Cricetulus griseus cgr-mir-378 precursor miRNA
Gene family
MIPF0000168; mir-378


Sequence

4223602 reads, 58625 reads per million, 6 experiments
cacccagggCUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcugaguggag
(((.((((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))).)))...

Structure
---   c    g  C              U    gu acc 
   cac cagg CU CUGACUCCAGGUCC GUGU  u   u
   ||| |||| || |||||||||||||| ||||  |    
   gug gucC GA GACUGAGGUUCAGG CAcg  a   c
gag   a    G  A              U    au aag 


Annotation confidence Low
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Genome context
JH000650.1: 40907-40985 [+]

Database links

Mature cgr-miR-378-5p

Accession MIMAT0023943
Description Cricetulus griseus cgr-miR-378-5p mature miRNA
Sequence 10 - CUCCUGACUCCAGGUCCUGUGU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-378-3p

Accession MIMAT0023944
Description Cricetulus griseus cgr-miR-378-3p mature miRNA
Sequence 48 - ACUGGACUUGGAGUCAGAAGGC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75