Stem-loop cgr-mir-381

Accession

MI0020517

Description

Cricetulus griseus cgr-mir-381 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

6382 reads, 66 reads per million, 6 experiments

uauuguuugguacuuaaagcgagguugcccuuuguauauucgguuuauugacauggaaUAUACAAGGGCAAGCUCUCUGUgaguaucaaa
.....(((((((((((.((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).)).)))))))))))

Structure

uauug           a  c   g        u        g  uua 
     uuugguacuua ag gag uugcccuu guauauuc gu   u
     ||||||||||| || ||| |||||||| |||||||| ||    
     aaacuaugagU UC CUC AACGGGAA CAUAUaag ua   u
-----           G  U   G        -        g  cag 

Annotation confidence Not enough data

Genome context

JH000884.1: 55360-55449 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cgr-mir-381

Mature cgr-miR-381

• Accession: MIMAT0023946
• Description: Cricetulus griseus cgr-miR-381 mature miRNA
• Sequence: 59 - UAUACAAGGGCAAGCUCUCUGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75