miRBase entry: cgr-mir-425

Stem-loop cgr-mir-425


Accession
MI0020524
Description
Cricetulus griseus cgr-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425


Sequence

49006 reads, 684 reads per million, 6 experiments
gugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaagaagcCAUCGGGAAUGUCGUGUCCGCccagugcucu
(.((.((((...(((((((.((.(((((....((((............))))))))).)))))))))...)))).)).).

Structure
- u  u    AAU       U  C     UUGA    gcacc 
 g gc uugg   GACACGA CA UCCCG    gugg     c
 | || ||||   ||||||| || |||||    ||||      
 c cg gacc   CUGUGCU GU AGGGC    UACc     a
u u  u    CGC       -  A     ----    gaaga 


Annotation confidence High
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Genome context
JH001800.1: 109479-109558 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-425-5p

Accession MIMAT0023958
Description Cricetulus griseus cgr-miR-425-5p mature miRNA
Sequence 10 - AAUGACACGAUCACUCCCGUUGA - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-425-3p

Accession MIMAT0023959
Description Cricetulus griseus cgr-miR-425-3p mature miRNA
Sequence 50 - CAUCGGGAAUGUCGUGUCCGC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75