Stem-loop cgr-mir-486

Accession

MI0020530

Description

Cricetulus griseus cgr-mir-486 precursor miRNA

Gene family

MIPF0000220; mir-486

Sequence

6576 reads, 72 reads per million, 6 experiments

ccugaggggUCCUGUACUGAGCUGCCCCGAGguccuucauugugcucagcuCGGGGCAGCUCAGUACAAGACGcaucggggug
(((((.(.(((.(((((((((((((((((((..................))))))))))))))))))).))).).)))))...

Structure

---     g g   C                   guccuuca 
   ccuga g gUC UGUACUGAGCUGCCCCGAG        u
   ||||| | ||| |||||||||||||||||||         
   gggcu c CAG ACAUGACUCGACGGGGCuc        u
gug     a G   A                   gacucgug 

Annotation confidence Low

Genome context

JH000379.1: 1110602-1110684 [+]

Mature cgr-miR-486-5p

• Accession: MIMAT0023967
• Description: Cricetulus griseus cgr-miR-486-5p mature miRNA
• Sequence: 10 - UCCUGUACUGAGCUGCCCCGAG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-486-3p

• Accession: MIMAT0023968
• Description: Cricetulus griseus cgr-miR-486-3p mature miRNA
• Sequence: 52 - CGGGGCAGCUCAGUACAAGACG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75