miRBase entry: cgr-mir-496

Stem-loop cgr-mir-496


Accession
MI0020531
Description
Cricetulus griseus cgr-mir-496 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

5663 reads, 44 reads per million, 6 experiments
ucccgaaaucaaguguucgaacggagguuguccaugguguguucauuuuauuuaugaugAGUAUUACAUGGCCAAUCUCCuuucggcacu
...........(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))

Structure
ucccgaaauca     u    c        u     gu         uua 
           agugu cgaa ggagguug ccaug  guguucauu   u
           ||||| |||| |||||||| |||||  |||||||||    
           ucacg gcuu CCUCUAAC GGUAC  UAUGAguag   u
-----------     -    u        C     AU         uau 


Annotation confidence Low
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Genome context
JH000884.1: 69107-69196 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from cgr-mir-496
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-496

Accession MIMAT0023969
Description Cricetulus griseus cgr-miR-496 mature miRNA
Sequence 60 - AGUAUUACAUGGCCAAUCUCC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75