miRBase entry: cgr-mir-497

Stem-loop cgr-mir-497


Accession
MI0020532
Description
Cricetulus griseus cgr-mir-497 precursor miRNA
Gene family
MIPF0000231; mir-497

Literature search
1 open access papers mention cgr-mir-497
(1 sentences)

Sequence

8453 reads, 121 reads per million, 6 experiments
cucccgcccCAGCAGCACACUGUGGUUUGUAcggcacuguggccacgucCAAACCACACUGUGGUGUUAGAgcgagggugg
...(((((((((((.((((.(((((((((.(((((......)))..)).))))))))).)))).)))).....).))))))

Structure
cuc      - -----    G    C         U  --   ac 
   ccgccc C     AGCA CACA UGUGGUUUG Ac  ggc  u
   |||||| |     |||| |||| ||||||||| ||  |||   
   gguggg g     UUGU GUGU ACACCAAAC ug  ccg  g
---      a cgAGA    G    C         c  ca   gu 


Annotation confidence Not enough data
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Genome context
JH000064.1: 2276442-2276522 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-497
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-497-5p

Accession MIMAT0023970
Description Cricetulus griseus cgr-miR-497-5p mature miRNA
Sequence 10 - CAGCAGCACACUGUGGUUUGUA - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-497-3p

Accession MIMAT0023971
Description Cricetulus griseus cgr-miR-497-3p mature miRNA
Sequence 50 - CAAACCACACUGUGGUGUUAGA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75