miRBase entry: cgr-mir-503

Stem-loop cgr-mir-503


Accession
MI0020536
Description
Cricetulus griseus cgr-mir-503 precursor miRNA
Gene family
MIPF0000183; mir-503


Sequence

23767 reads, 327 reads per million, 6 experiments
gucgugcccuagcagcguccaaaacaguacugcaguauuugguaagcuggAGUAUUGUUUCCGCUGCUCGGguaagucug
(.(.(((((.(((((((....((((((((((.((((.........)))).)))))))))).))))))).))))).).)..

Structure
-- u g     u       ucca          g    auu 
  g c ugccc agcagcg    aaacaguacu cagu   u
  | | ||||| |||||||    |||||||||| ||||   g
  c g augGG UCGUCGC    UUUGUUAUGA gucg   g
gu u a     C       ---C          g    aau 


Annotation confidence Not enough data
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Genome context
JH000353.1: 1175314-1175393 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cgr-mir-503
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-503

Accession MIMAT0023977
Description Cricetulus griseus cgr-miR-503 mature miRNA
Sequence 51 - AGUAUUGUUUCCGCUGCUCGG - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75