miRBase entry: cgr-mir-532

Stem-loop cgr-mir-532


Accession
MI0020539
Description
Cricetulus griseus cgr-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

9038 reads, 76 reads per million, 6 experiments
uuucucuuuCAUGCCUUGAGUGUAGGACCGUuaacauccuaauuacCCUCCCACACCCAAGGUUUGCaggagagcaa
.(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)))))))...

Structure
--u       u  U      A    A   CC  uaaca 
   uucucuu CA GCCUUG GUGU GGA  GU     u
   ||||||| || |||||| |||| |||  ||     c
   gagagga GU UGGAAC CACA CCU  ca     c
aac       C  U      C    C   CC  uuaau 


Annotation confidence Not enough data
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Genome context
JH000611.1: 77734-77810 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-532-5p

Accession MIMAT0023981
Description Cricetulus griseus cgr-miR-532-5p mature miRNA
Sequence 10 - CAUGCCUUGAGUGUAGGACCGU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-532-3p

Accession MIMAT0023982
Description Cricetulus griseus cgr-miR-532-3p mature miRNA
Sequence 47 - CCUCCCACACCCAAGGUUUGC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75