miRBase entry: cgr-mir-542

Stem-loop cgr-mir-542


Accession
MI0020540
Description
Cricetulus griseus cgr-mir-542 precursor miRNA
Gene family
MIPF0000185; mir-542


Sequence

45282 reads, 613 reads per million, 6 experiments
ucucaggcguCUCGGGGAUCAUCAUGUCACGAgauacacugugcccuUGUGACAGAUUGAUAACUGAAAGgucuuggaa
(((.((((.(.((((..((((...(((((((((............)))))))))...))))..)))).).)))).))).

Structure
-   c    g C    GG    UCA         auaca 
 ucu aggc u UCGG  AUCA   UGUCACGAg     c
 ||| |||| | ||||  ||||   |||||||||      
 agg ucug A AGUC  UAGU   ACAGUGUuc     u
a   u    G A    AA    UAG         ccgug 


Annotation confidence Low
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Genome context
JH000353.1: 1170704-1170782 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cgr-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-542-5p

Accession MIMAT0023983
Description Cricetulus griseus cgr-miR-542-5p mature miRNA
Sequence 11 - CUCGGGGAUCAUCAUGUCACGA - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-542-3p

Accession MIMAT0023984
Description Cricetulus griseus cgr-miR-542-3p mature miRNA
Sequence 48 - UGUGACAGAUUGAUAACUGAAAG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75