Stem-loop cgr-mir-598

Accession

MI0020542

Description

Cricetulus griseus cgr-mir-598 precursor miRNA

Gene family

MIPF0000393; mir-598

Sequence

4520 reads, 65 reads per million, 6 experiments

gcugaugcuggcggugaugccgauggugcgagcugaaaaugggcugcUACGUCAUCGUCGUCAUCGUUAUCaucaucauc
(.(((((.(((((((((((.(((((((((.((((.......)))))).))..))))).))))))))))).))))).)...

Structure

--- c     c           c     --  -  g    ga 
   g ugaug uggcggugaug cgaug  gu gc agcu  a
   | ||||| ||||||||||| |||||  || || ||||  a
   c acuaC AUUGCUACUGC GCUAC  CA cg ucgg  a
cua u     U           U     UG  U  -    gu 

Annotation confidence Low

Genome context

JH000094.1: 1622996-1623075 [-]

Mature cgr-miR-598

• Accession: MIMAT0023986
• Description: Cricetulus griseus cgr-miR-598 mature miRNA
• Sequence: 48 - UACGUCAUCGUCGUCAUCGUUAUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75