Stem-loop cgr-mir-671

Accession

MI0020549

Description

Cricetulus griseus cgr-mir-671 precursor miRNA

Gene family

MIPF0000358; mir-671

Sequence

46026 reads, 602 reads per million, 6 experiments

caggaagaggAGGAAGCCCUGGAGGGGCUGGAGGugauggauguuuuccUCCGGUUCUCAGGGCUCCACCucuuucgag
..((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).))))))))...

Structure

-ca        A   A      GA           u  ug 
   ggaagagg GGA GCCCUG  GGGGCUGGAGG ga  g
   |||||||| ||| ||||||  ||||||||||| ||  a
   cuuucuCC CCU CGGGAC  UCUUGGCCUcc uu  u
gag        A   -      --           u  ug 

Annotation confidence High

Genome context

JH000263.1: 907955-908033 [-]

Mature cgr-miR-671-5p

• Accession: MIMAT0023996
• Description: Cricetulus griseus cgr-miR-671-5p mature miRNA
• Sequence: 11 - AGGAAGCCCUGGAGGGGCUGGAGG - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-671-3p

• Accession: MIMAT0023997
• Description: Cricetulus griseus cgr-miR-671-3p mature miRNA
• Sequence: 50 - UCCGGUUCUCAGGGCUCCACC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75