Stem-loop cgr-mir-92a

Accession

MI0020560

Description

Cricetulus griseus cgr-mir-92a precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

2 open access papers mention cgr-mir-92a
(16 sentences)

Sequence

420768 reads, 5864 reads per million, 6 experiments

cuuucuacacAGGCUGGGAUUUGUUGCAAUGCUguguuucucgauggUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((..((.((((((((((........))))))))))))..))))))))))))..)).....

Structure

-cuuu  ac            UU  U          guu 
     cu  acAGGCUGGGAU  GU GCAAUGCUgu   u
     ||  ||||||||||||  || ||||||||||    
     ga  UGUCCGGCCCUG  CA CGUUAUggua   c
gguuu  gu            UU  -          gcu 

Annotation confidence High

Genome context

JH001979.1: 108958-109035 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cgr-mir-92a

Mature cgr-miR-92a-5p

• Accession: MIMAT0024009
• Description: Cricetulus griseus cgr-miR-92a-5p mature miRNA
• Sequence: 11 - AGGCUGGGAUUUGUUGCAAUGCU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-92a-3p

• Accession: MIMAT0024010
• Description: Cricetulus griseus cgr-miR-92a-3p mature miRNA
• Sequence: 48 - UAUUGCACUUGUCCCGGCCUGU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75