miRBase entry: cgr-mir-99a

Stem-loop cgr-mir-99a


Accession
MI0020564
Description
Cricetulus griseus cgr-mir-99a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

102072 reads, 1448 reads per million, 6 experiments
cguugacauaAACCCGUAGAUCCGAUCUUGUggugaaaguggacgcaCAAGCUCGCUUCUAUGGGUCUGuggcagugu
(((((.((((.(((((((((..(((.((((((((........)).)))))).)))..))))))))).)))).))))).

Structure
-     a    A         UC   U      -  gaa 
 cguug caua ACCCGUAGA  CGA CUUGUg gu   a
 ||||| |||| |||||||||  ||| |||||| ||    
 gugac guGU UGGGUAUCU  GCU GAACac ca   g
u     g    C         UC   C      g  ggu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
JH000146.1: 137344-137421 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-99a-5p

Accession MIMAT0024016
Description Cricetulus griseus cgr-miR-99a-5p mature miRNA
Sequence 11 - AACCCGUAGAUCCGAUCUUGU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-99a-3p

Accession MIMAT0024017
Description Cricetulus griseus cgr-miR-99a-3p mature miRNA
Sequence 48 - CAAGCUCGCUUCUAUGGGUCUG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75