Stem-loop egu-MIR172a

Accession

MI0020567

Description

Elaeis guineensis egu-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

ugugcagcaucaucaagauucacaucuguuaaucacugccaaauucuguuuaguuauugauccugagccuucaacaucugcguugucucaggaggugaaugaaggaaugcaggugcgacaacaaggcguacggucugggagauaugccaaagaagucuacagggacaaaggaugAGAAUCUUGAUGAUGCUGCAU
.((((((((((((((((((((.(((((.....((.(((.....((((.....(((.(((..((((..((((((.(((((.(.........).)))))..))))))....))))..))).)))..(((((...((((...)))))))))..)))).....))).))....))))).))))))))))))))))))))

Structure

u                    a     guuaa  a   ccaaa    -----------------------guuua   a   au    --ag      -a     g guu 
 gugcagcaucaucaagauuc caucu     uc cug     uucu                            guu uug  ccug    ccuuca  caucu c   g
 |||||||||||||||||||| |||||     || |||     ||||                            ||| |||  ||||    ||||||  ||||| |   u
 UACGUCGUAGUAGUUCUAAG guagg     ag gac     aaga                            caa agc  ggac    ggaagu  gugga g   c
-                    A     -aaac  g   aucug    aaccguauagagggucuggcaugcggaa   c   gu    guaa      aa     g acu 

Annotation confidence Not enough data

Genome context

Unknown

Mature egu-miR172a

• Accession: MIMAT0024020
• Description: Elaeis guineensis egu-miR172a mature miRNA
• Sequence: 175 - AGAAUCUUGAUGAUGCUGCAU - 195
• Evidence: experimental ; qPCR [1], RT-PCR [1]

References

1. Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
   "Mehrpooyan F, Othman RY, Harikrishna JA"
   Tree Genet Genomes. (2012) 8:1331-1343