Stem-loop egu-MIR172c

Accession

MI0020569

Description

Elaeis guineensis egu-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

gugcagcaucaucaagauucacauccuucgcccaucucugcuugugccccccaggagaaggguauuucaggauuucuuauagauuuucuuaugggaggaguuucugcugcugucucgaaaacagcagcugcuccaauugagcgggugaagcucuuaauucagaaccaggaugAGAAUCUUGAUGAUGCUGCAU
((((((((((((((((((((.((((((..((((.(((((((....))......))))).))))...........((((((((......))))))))((((((((.((((((((.......))))))))(((((.....)))))...))))))))............)))))).))))))))))))))))))))

Structure

                    a      -----------------------------------------------------------------------------------------------------uc    a     ------  u 
gugcagcaucaucaagauuc cauccu                                                                                                       gccc ucucu      gc u
|||||||||||||||||||| ||||||                                                                                                       |||| |||||      ||  
UACGUCGUAGUAGUUCUAAG guagga                                                                                                       uggg agagg      cg g
                    A      ccaagacuuaauucucgaagugggcgaguuaaccucgucgacgacaaaagcucugucgucgucuuugaggaggguauucuuuuagauauucuuuaggacuuua    a     accccc  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature egu-miR172c

• Accession: MIMAT0024022
• Description: Elaeis guineensis egu-miR172c mature miRNA
• Sequence: 173 - AGAAUCUUGAUGAUGCUGCAU - 193
• Evidence: experimental ; qPCR [1], RT-PCR [1]

References

1. Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
   "Mehrpooyan F, Othman RY, Harikrishna JA"
   Tree Genet Genomes. (2012) 8:1331-1343