Stem-loop egu-MIR172d

Accession

MI0020570

Description

Elaeis guineensis egu-MIR172d precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

gugcagcaucaucaagauucacaucguucccaucucuggguuugaaggugauaacaugauugacagguccaccaaccuugauugguacaagggcccgacccuucuugaggcucuugacuugauacaggagcccaagaggcccucagacaagccccuccgucuuccacuucaggaugUGAAUCUUGAUGAUGCUGCAC
(((((((((((((((((((((((((...((((....)))).((((((..((......((((....)))).(((((......)))))...((((((.......(((((.((((((((........))))))))))))))))))).((((..........))))))..)))))))))))))))))))))))))))))))

Structure

                         guucccaucucugggu      gu  uaacaugauugacagguccaccaaccuugauugguaca      cgacccu     a        acu 
gugcagcaucaucaagauucacauc                uugaag  ga                                      agggcc       ucuug ggcucuug   u
|||||||||||||||||||||||||                ||||||  ||                                      ||||||       ||||| ||||||||    
CACGUCGUAGUAGUUCUAAGUguag                gacuuc  cu                                      ucccgg       agaac ccgaggac   g
                         ----------------      ac  -------------------ucugccuccccgaacagac      -------     -        aua 

Annotation confidence Not enough data

Genome context

Unknown

Mature egu-miR172d

• Accession: MIMAT0024023
• Description: Elaeis guineensis egu-miR172d mature miRNA
• Sequence: 177 - UGAAUCUUGAUGAUGCUGCAC - 197
• Evidence: experimental ; qPCR [1], RT-PCR [1]

References

1. Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
   "Mehrpooyan F, Othman RY, Harikrishna JA"
   Tree Genet Genomes. (2012) 8:1331-1343