Stem-loop egu-MIR172e

Accession

MI0020571

Description

Elaeis guineensis egu-MIR172e precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

augcagcaucaucaagauucucauccugguucugaauuaagagcuucacccgcucaauuggagcagcugcuguuuucgagacagcagcagaaacuccucccauaagaaaaucuauaagaaauccugaaauacccuucuccuggggggcacaagcagagaugggcgauggaugUGAAUCUUGAUGAUGCUGCAC
.(((((((((((((((((((.(((((.((((((......))))))((.(((((((.....)))).((((((((((...)))))))))).......(((((((..((((........((.....)).........))))..))))))).............))).)).))))).))))))))))))))))))).

Structure

a                   u     ugguucugaauuaagagcu  a   gcucaauuggagcagcugcuguuuucgagacagcagcagaaacu       ua    -aaucuaua  a 
 ugcagcaucaucaagauuc caucc                   uc ccc                                            ccuccca  agaa         ag a
 ||||||||||||||||||| |||||                   || |||                                            |||||||  ||||         || a
 ACGUCGUAGUAGUUCUAAG guagg                   ag ggg                                            ggggggu  ucuu         uc u
C                   U     ------------------u  c   -------------------------------uagagacgaacac       cc    cccauaaag  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature egu-miR172e

• Accession: MIMAT0024024
• Description: Elaeis guineensis egu-miR172e mature miRNA
• Sequence: 173 - UGAAUCUUGAUGAUGCUGCAC - 193
• Evidence: experimental ; qPCR [1], RT-PCR [1]

References

1. Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
   "Mehrpooyan F, Othman RY, Harikrishna JA"
   Tree Genet Genomes. (2012) 8:1331-1343