miRBase entry: ptr-mir-222

Stem-loop ptr-mir-222


Accession
MI0020573
Description
Pan troglodytes ptr-mir-222 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

cagcugcuggaagguguagguacccucaauggcucaguagccaguguagauccugucuuucguaaucagcAGCUACAUCUGGCUACUGGGUCucugauggcaucuucuagcu
.....(((((((((((......((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))))))))))))).

Structure
cagcu           uaggua  c   au              -     auc   ucuu 
     gcuggaaggug      cc uca  ggcucaguagccag uguag   cug    u
     |||||||||||      || |||  |||||||||||||| |||||   |||    c
     cgaucuucuac      gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
----u           ------  u   cu              U     GAc   uaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 45932349-45932460 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-222
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-222

Accession MIMAT0024026
Description Pan troglodytes ptr-miR-222 mature miRNA
Sequence 71 - AGCUACAUCUGGCUACUGGGUC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116