miRBase entry: ptr-mir-3151

Stem-loop ptr-mir-3151


Accession
MI0020578
Description
Pan troglodytes ptr-mir-3151 precursor miRNA
Gene family
MIPF0001394; mir-3151


Sequence

auacaaccuuuggggugaugGGUGGGGCAAUGGGAUCAGGUGccucaaagggcaucccaccugaucccacagccccaccugucaccccaaaagccugcugcuccugcccu
........((((((((((((((((((((..(((((((((((((((....)))).....)))))))))))..))))))))))))))))))))(((.....)))........

Structure
-----------auacaacc                    AA           -----    c 
                   uuuggggugaugGGUGGGGC  UGGGAUCAGGU     Gccu a
                   ||||||||||||||||||||  |||||||||||     ||||  
                   aaaccccacuguccaccccg  acccuagucca     cggg a
ucccguccucgucguccga                    ac           cccua    a 


Annotation confidence Not enough data
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Genome context
chr8: 105098667-105098776 [+]

Database links

Mature ptr-miR-3151

Accession MIMAT0024031
Description Pan troglodytes ptr-miR-3151 mature miRNA
Sequence 21 - GGUGGGGCAAUGGGAUCAGGUG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116