miRBase entry: ptr-mir-655

Stem-loop ptr-mir-655


Accession
MI0020580
Description
Pan troglodytes ptr-mir-655 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

uucguuucagaaauauucaaggauauuugaggagagguuauccguguuauguucgcuucauucaucaugaAUAAUACAUGGUUAACCUCUUuuugaauaucagacucu
(((......))).........(((((((((((((((((((.((((((..((((((............))))))..)))))).))))))))))))))))))).......

Structure
uucguuucagaaauauucaag                   u      ua      cuuca 
                     gauauuugaggagagguua ccgugu  uguucg     u
                     ||||||||||||||||||| ||||||  ||||||      
                     cuauaaguuuUUCUCCAAU GGUACA  AUAagu     u
--------------ucucaga                   U      UA      acuac 


Annotation confidence Not enough data
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Genome context
chr14: 86297767-86297874 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from ptr-mir-655
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-655

Accession MIMAT0024033
Description Pan troglodytes ptr-miR-655 mature miRNA
Sequence 71 - AUAAUACAUGGUUAACCUCUU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116