miRBase entry: ptr-mir-3173

Stem-loop ptr-mir-3173


Accession
MI0020581
Description
Pan troglodytes ptr-mir-3173 precursor miRNA
Gene family
MIPF0001383; mir-3173


Sequence

ugagucuuuguuggucuugggccagcuucccugcccugccuguuuucuccuuugugauuuuaugagaacAAAGGAGGAAAUAGGCAGGCCAgggaaacgcucucucucuccc
.((((....(((((((...)))))))(((((((.(((((((((((((((((((((..((....))..))))))))))))))))))))).)))))))..))))..........

Structure
---------u    cuuuguuggucuugggccagc       c                     ga  u 
          gagu                     uucccug ccugccuguuuucuccuuugu  uu u
          ||||                     ||||||| |||||||||||||||||||||  ||  
          cucg                     aagggAC GGACGGAUAAAGGAGGAAAca  ag a
cccucucucu    -------------------ca       C                     ag  u 


Annotation confidence Not enough data
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Genome context
chr14: 80289673-80289784 [-]

Database links

Mature ptr-miR-3173

Accession MIMAT0024034
Description Pan troglodytes ptr-miR-3173 mature miRNA
Sequence 70 - AAAGGAGGAAAUAGGCAGGCCA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116