miRBase entry: ptr-mir-3200

Stem-loop ptr-mir-3200


Accession
MI0020583
Description
Pan troglodytes ptr-mir-3200 precursor miRNA
Gene family
MIPF0001441; mir-3200


Sequence

agagagacaaagaaggagguggucgagggaaucugagaaggcgcacaagguuuguguccaauacaguccaCACCUUGCGCUACUCAGGUCUGcucgugcccucccaugau
..............(((((.(..((((.(.(((((((..((((((..((((((((((...)))))).....)))))))))).))))))).).))))..))))))......

Structure
agagagacaaagaa     u gu    g a       aa      ca    -----      c 
              ggagg g  cgag g aucugag  ggcgca  aggu     uugugu  
              ||||| |  |||| | |||||||  ||||||  ||||     |||||| c
              ccucc c  gcuc U UGGACUC  UCGCGU  UCCA     gacaua  
--------uaguac     - gu    G C       -A      --    Caccu      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr22: 17307575-17307684 [+]

Database links

Mature ptr-miR-3200

Accession MIMAT0024036
Description Pan troglodytes ptr-miR-3200 mature miRNA
Sequence 71 - CACCUUGCGCUACUCAGGUCUG - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116