miRBase entry: ptr-mir-3127

Stem-loop ptr-mir-3127


Accession
MI0020585
Description
Pan troglodytes ptr-mir-3127 precursor miRNA
Gene family
MIPF0001439; mir-3127


Sequence

ccccuaggcuggccaggcccAUCAGGGCUUGUGGAAUGGGAAGgagaagggacgcuuccccuucugcaggccugcuggguguggcuggaccccucgugugcucacccacuc
......(((((((((.(((((.((((.(((((((((.((((((...........)))))).))))))))))))).))))).))))))).))....(((....)))......

Structure
--------------ccccua  -       g     U    G         U      gaga 
                    gg cuggcca gcccA CAGG CUUGUGGAA GGGAAG    a
                    || ||||||| ||||| |||| ||||||||| ||||||    g
                    cc ggucggu ugggu gucc ggacgucuu cccuuc    g
cucacccacucgugugcucc  a       g     c    -         c      gcag 


Annotation confidence Not enough data
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Genome context
chr2A: 95927158-95927268 [+]

Database links

Mature ptr-miR-3127

Accession MIMAT0024038
Description Pan troglodytes ptr-miR-3127 mature miRNA
Sequence 21 - AUCAGGGCUUGUGGAAUGGGAAG - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116