miRBase entry: ptr-mir-1252

Stem-loop ptr-mir-1252


Accession
MI0020586
Description
Pan troglodytes ptr-mir-1252 precursor miRNA
Gene family
MIPF0000968; mir-1252


Sequence

aaaaaaugugagguguagaaAGAAGGAAGUUGAAUUCAUUuagaaaagagaauuccaaaugagcuuaauuuccuuuuuucuaaaucuuaauaaucuaccuugcuuuucu
.......((((((((((((((((((((((((((.(((((((.(((.......))).))))))).)))))))))))))))))).............))))))))......

Structure
aaaaaau        -------------                  A       a   aa 
       gugaggug             uagaaAGAAGGAAGUUGA UUCAUUu gaa  g
       ||||||||             |||||||||||||||||| ||||||| |||  a
       cguuccau             aucuuuuuuccuuuaauu gaguaaa cuu  g
-ucuuuu        cuaauaauucuaa                  c       c   aa 


Annotation confidence Not enough data
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Genome context
chr12: 81830209-81830317 [+]

Database links

Mature ptr-miR-1252

Accession MIMAT0024039
Description Pan troglodytes ptr-miR-1252 mature miRNA
Sequence 21 - AGAAGGAAGUUGAAUUCAUU - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116