miRBase entry: ptr-mir-3660

Stem-loop ptr-mir-3660


Accession
MI0020587
Description
Pan troglodytes ptr-mir-3660 precursor miRNA
Gene family
MIPF0001397; mir-3660


Sequence

agugaaaaggagaaagaagaacuggacaaaauuaaaaugcucuucugucaguguaauaguucauaugggcACUGACAGGAGAGCGUUUUGAcuuugucaagugugucugc
..............(((...(((.((((((.(((((((((((((((((((((((.(((.....)))..))))))))))))))))))))))).)))))).)))...)))..

Structure
agugaaaaggagaa   aga   g      a                       -a   g 
              aga   acu gacaaa uuaaaaugcucuucugucagugu  aua u
              |||   ||| |||||| |||||||||||||||||||||||  ||| u
              ucu   uga cuguuu AGUUUUGCGAGAGGACAGUCAcg  uau c
------------cg   gug   a      c                       gg   a 


Annotation confidence Not enough data
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Genome context
chr5: 25598617-25598726 [+]

Database links

Mature ptr-miR-3660

Accession MIMAT0024040
Description Pan troglodytes ptr-miR-3660 mature miRNA
Sequence 71 - ACUGACAGGAGAGCGUUUUGA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116