miRBase entry: ptr-mir-4742

Stem-loop ptr-mir-4742


Accession
MI0020590
Description
Pan troglodytes ptr-mir-4742 precursor miRNA
Gene family
MIPF0001552; mir-4742


Sequence

uagaaaaugaagauauuucaUCAGGCAAAGGGAUAUUUACAGAuacuuuuuaaaauuuguuugaguugaggcagaguaaauaucuguauucuccuuugccugcagggaguuca
...........((..((((..(((((((((((.....((((((((...((((...(((((((......))))))).))))))))))))...)))))))))))..))))..)).

Structure
uagaaaaugaa  ua    aU           AUAUU        cuu    aaa       ga 
           ga  uuuc  CAGGCAAAGGG     UACAGAua   uuua   uuuguuu  g
           ||  ||||  |||||||||||     ||||||||   ||||   |||||||   
           cu  aggg  guccguuuccu     augucuau   aaau   agacgga  u
----------a  ug    ac           --cuu        ---    --g       gu 


Annotation confidence Not enough data
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Genome context
chr1: 203354433-203354545 [-]

Database links

Mature ptr-miR-4742

Accession MIMAT0024043
Description Pan troglodytes ptr-miR-4742 mature miRNA
Sequence 21 - UCAGGCAAAGGGAUAUUUACAGA - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116