miRBase entry: ptr-mir-378b

Stem-loop ptr-mir-378b


Accession
MI0020591
Description
Pan troglodytes ptr-mir-378b precursor miRNA
Gene family
MIPF0000168; mir-378


Sequence

ggccucaguuuccuccacugaagaaugggaggaggcuggucauugagucuucaaggcuaguggaaagagcACUGGACUUGGAGGCAGAAAgacccaacuugcauccugg
.....(((((((((((.(........))))))))))))(((.((..(((((((((.((((((.......)))))).)))))))))..)).)))................

Structure
ggccucaguuuccuccacugaagaaugggaggaggcug   a  ga         g      ga 
                                      guc uu  gucuucaag cuagug  a
                                      ||| ||  ||||||||| ||||||  a
                                      cag AA  CGGAGGUUC GGUCAc  g
----------------------gguccuacguucaacc   A  GA         A      ga 


Annotation confidence Not enough data
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Genome context
chr3: 10600720-10600828 [+]

Database links

Mature ptr-miR-378b

Accession MIMAT0024044
Description Pan troglodytes ptr-miR-378b mature miRNA
Sequence 71 - ACUGGACUUGGAGGCAGAAA - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116