miRBase entry: ptr-mir-3943

Stem-loop ptr-mir-3943


Accession
MI0020593
Description
Pan troglodytes ptr-mir-3943 precursor miRNA
Gene family
MIPF0001400; mir-3943


Sequence

cacagacggcagcugcggccUAGCCCCCAGGCUUCACUUGGCGuggacaacuugcuaaguaaaguggggggugggccacggcuggcuccuaccuggacaggccuccagcuaac
....((.(.((((((.((((((.(((((..((((.((((((((.(.....).)))))))).))))))))).)))))).)))))).)))....(((((......))))).....

Structure
---------------------caca  c g      c      G     AG    C        u g 
                         ga g cagcug ggccUA CCCCC  GCUU ACUUGGCG g a
                         || | |||||| |||||| |||||  |||| |||||||| | c
                         cu c gucggc ccgggu ggggg  ugaa ugaaucgu c a
caaucgaccuccggacagguccauc  - g      a      g     --    a        u a 


Annotation confidence Not enough data
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Genome context
chr7: 39774077-39774189 [-]

Database links

Mature ptr-miR-3943

Accession MIMAT0024046
Description Pan troglodytes ptr-miR-3943 mature miRNA
Sequence 21 - UAGCCCCCAGGCUUCACUUGGCG - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116