miRBase entry: ptr-mir-3138

Stem-loop ptr-mir-3138


Accession
MI0020594
Description
Pan troglodytes ptr-mir-3138 precursor miRNA
Gene family
MIPF0001428; mir-3138


Sequence

cuggagccuuccccugcccuccucggcacuucccccaccucacugcccgggugcccacaagacuguggACAGUGAGGUAGAGGGAGUGccgaggaggggacagcugggccu
..((.((((....((((((((((((((((((((.(.((((((((((((((............))).)).))))))))).).)))))))))))))))))..)))..))))))

Structure
cu  a    uccc   --                 c c         -  -   gugcc 
  gg gccu    cug  cccuccucggcacuucc c accucacug cc cgg     c
  || ||||    |||  ||||||||||||||||| | ||||||||| || |||      
  uc cggg    gac  gggaggagccGUGAGGG G UGGAGUGAC gg guc     a
--  -    --uc   ag                 A A         A  u   agaac 


Annotation confidence Not enough data
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Genome context
chr4: 10255758-10255868 [-]

Database links

Mature ptr-miR-3138

Accession MIMAT0024047
Description Pan troglodytes ptr-miR-3138 mature miRNA
Sequence 69 - ACAGUGAGGUAGAGGGAGUG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116