Stem-loop ptr-mir-3117

Accession

MI0020597

Description

Pan troglodytes ptr-mir-3117 precursor miRNA

Gene family

MIPF0001506; mir-3117

Sequence

auuuacacuagauggaaucgaauuucccuaaagggccagacacuauacgagucauauaagggaaggcauuAUAGGACUCAUAUAGUGCCAGGuguuuugugggacacuauu
........................(((((((((.(((.(.(((((((.(((((.(((((.(.....).))))).))))).))))))).).))).))))).)))).......

Structure

auuuacacuagauggaaucgaauu    -     g   a a       c     a     g g 
                        uccc uaaag gcc g cacuaua gaguc uauaa g a
                        |||| ||||| ||| | ||||||| ||||| ||||| | a
                        aggg guuuu uGG C GUGAUAU CUCAG AUAuu c g
-----------------uuaucac    u     g   A C       A     G     a g 

Annotation confidence Not enough data

Genome context

chr1: 66617975-66618085 [+]

Mature ptr-miR-3117

• Accession: MIMAT0024050
• Description: Pan troglodytes ptr-miR-3117 mature miRNA
• Sequence: 71 - AUAGGACUCAUAUAGUGCCAGG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116