miRBase entry: ptr-mir-200c

Stem-loop ptr-mir-200c


Accession
MI0020598
Description
Pan troglodytes ptr-mir-200c precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

acccaaggugggcgggcugggcgggggcccucgucuuacccagcaguguuugggugcgguugggagucucUAAUACUGCCGGGUAAUGAUGGAggccccugucccugug
.((((...))))((((...((((((((((.(((((((((((.((((((((.(((.((........))))).)))))))).)))))).))))).))))))))))))))..

Structure
acccaagguggg    cug          c     -      a        u   u  ggu 
            cggg   ggcgggggcc ucguc uuaccc gcaguguu ggg gc   u
            ||||   |||||||||| ||||| |||||| |||||||| ||| ||    
            gucc   cuguccccgg GGUAG AAUGGG CGUCAUAA cuc ug   g
----------gu    ---          A     U      C        U   -  agg 


Annotation confidence Not enough data
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Genome context
chr12: 7286057-7286165 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-200c

Accession MIMAT0024051
Description Pan troglodytes ptr-miR-200c mature miRNA
Sequence 71 - UAAUACUGCCGGGUAAUGAUGGA - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116