miRBase entry: ptr-mir-4536

Stem-loop ptr-mir-4536


Accession
MI0020599
Description
Pan troglodytes ptr-mir-4536 precursor miRNA
Gene family
MIPF0001319; mir-4536


Sequence

augcacuguauauaaacauaaUGUGGUAGAUAUAUGCACGAuauagguauguauguauguauguauaaaagcagggcaguauauauaucgugcauauaucuaccacauuuu
...................((((((((((((((((((((((((((.((((...(((.(((.(......).)))..))))))).))))))))))))))))))))))))))..

Structure
augcacuguauauaaacau                          g    gua   -a   a gu 
                   aaUGUGGUAGAUAUAUGCACGAuaua guau   ugu  ugu u  a
                   |||||||||||||||||||||||||| ||||   |||  ||| |   
                   uuacaccaucuauauacgugcuauau uaug   acg  acg a  u
-----------------uu                          a    ---   gg   a aa 


Annotation confidence Not enough data
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Genome context
chrX: 55219288-55219398 [+]

Database links

Mature ptr-miR-4536

Accession MIMAT0024052
Description Pan troglodytes ptr-miR-4536 mature miRNA
Sequence 22 - UGUGGUAGAUAUAUGCACGA - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116