miRBase entry: ptr-mir-3937

Stem-loop ptr-mir-3937


Accession
MI0020602
Description
Pan troglodytes ptr-mir-3937 precursor miRNA
Gene family
MIPF0001500; mir-3937


Sequence

gugugaagagagaagaaugcccaaccagcccucaguugcuacaguugccuguuguuucagcucgacaacaACAGGCGGCUGUAGCAAUGGGGGGcuggaugggcaucucaau
.........((((....((((((.(((((((((.((((((((((((((((((((((((.....)).)))))))))))))))))))))).))))))))).))))))))))...

Structure
gugugaaga    agaa      a         a                      -  a 
         gaga    ugccca ccagcccuc guugcuacaguugccuguuguu uc g
         ||||    |||||| ||||||||| |||||||||||||||||||||| || c
         cucu    acgggu ggucGGGGG UAACGAUGUCGGCGGACAacaa ag u
------uaa    ----      a         G                      c  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 39763304-39763415 [+]

Database links

Mature ptr-miR-3937

Accession MIMAT0024055
Description Pan troglodytes ptr-miR-3937 mature miRNA
Sequence 71 - ACAGGCGGCUGUAGCAAUGGGGGG - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116