miRBase entry: ptr-mir-548e

Stem-loop ptr-mir-548e


Accession
MI0020604
Description
Pan troglodytes ptr-mir-548e precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548e
(2 sentences)

Sequence

cuucugugaucuauggcuuuauuagguugguacaaaagcauucgcgguuuuugcuauuacuuuuaaaggcAAAAACUGCGACUACUUUUGcaccaaccugauagaaga
.................((((((((((((((.((((((...((((((((((((((.(((....))).))))))))))))))...)))))).))))))))))))))...

Structure
cuucugugaucuauggc              a      cau              a   c 
                 uuuauuagguuggu caaaag   ucgcgguuuuugcu uua u
                 |||||||||||||| ||||||   |||||||||||||| |||  
                 agauaguccaacca GUUUUC   AGCGUCAAAAAcgg aau u
--------------aga              c      AUC              a   u 


Annotation confidence Not enough data
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Genome context
chr10: 112595886-112595993 [+]

Database links

Mature ptr-miR-548e

Accession MIMAT0024057
Description Pan troglodytes ptr-miR-548e mature miRNA
Sequence 71 - AAAAACUGCGACUACUUUUG - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116