miRBase entry: ptr-mir-3193

Stem-loop ptr-mir-3193


Accession
MI0020609
Description
Pan troglodytes ptr-mir-3193 precursor miRNA
Gene family
MIPF0001401; mir-3193


Sequence

cucccccaccaaccccagggCUCCUGCGUAGGAUCUGAGGAGuggacgagucucauuacccagcuccugagcaggaaaaauaugucauuggcaagggucuaagaaucuuccu
.......(((....(((((((((((((.(((((.(((.((((((((....)).)))).))))).))))).)))))).......))).))))....)))..............

Structure
-------cuccccc   aacc    -   -------      G     U   A  -    -  c 
              acc    ccag ggC       UCCUGC UAGGA CUG GG AGug ga g
              |||    |||| |||       |||||| ||||| ||| || |||| ||  
              ugg    gguu cug       aggacg guccu gac cc uuac cu a
uccuucuaagaauc   gaac    a   uauaaaa      a     c   -  a    u  g 


Annotation confidence Not enough data
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Genome context
chr20: 32972336-32972447 [+]

Database links

Mature ptr-miR-3193

Accession MIMAT0024062
Description Pan troglodytes ptr-miR-3193 mature miRNA
Sequence 21 - CUCCUGCGUAGGAUCUGAGGAG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116