miRBase entry: ptr-mir-1260b

Stem-loop ptr-mir-1260b


Accession
MI0020613
Description
Pan troglodytes ptr-mir-1260b precursor miRNA
Gene family
MIPF0001381; mir-1260b


Sequence

gcggcugcugcucuccguuuAUCCCACCACUGCCACCAUuauugcuacuguucagcaggugcugcugguggugauggugauagucuggugggggcgguggggcugcug
.((((.(((.(...((((...(((((((((((.((((((((((((.......((((((...)))))))))))))))))).))))..))))))))))).).))).))))

Structure
g    u   g ucu    uuA       --    C            uacuguu      g 
 cggc gcu c   ccgu   UCCCACC  ACUG CACCAUuauugc       cagcag  
 |||| ||| |   ||||   |||||||  |||| ||||||||||||       |||||| u
 gucg cgg g   ggcg   ggggugg  ugau gugguaguggug       gucguc  
-    u   g --u    ---       uc    a            -------      g 


Annotation confidence Not enough data
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Genome context
chr11: 96423279-96423386 [+]

Database links

Mature ptr-miR-1260b

Accession MIMAT0024066
Description Pan troglodytes ptr-miR-1260b mature miRNA
Sequence 21 - AUCCCACCACUGCCACCAU - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116