Stem-loop ptr-mir-378e

Accession

MI0020614

Description

Pan troglodytes ptr-mir-378e precursor miRNA

Gene family

MIPF0000168; mir-378

Sequence

aaccuggcucugccugacuccagcguccaggccaggggcagacaguggacugagaacagugcccaagaccACUGGACUUGGAGUCAGGacaucauuuuaacagcuuua
.....((((.(((((((((((((.((((((.....(((((..(((....))).......))))).......))))))))))))))))).))..........))))...

Structure

aaccu    ---------c  -           c      --gccag     -----ga   u 
     ggcu          ug ccugacuccag guccag       gggca       cag g
     ||||          || ||||||||||| ||||||       |||||       |||  
     ucga          ac GGACUGAGGUU CAGGUC       cccgu       guc g
--auu    caauuuuacu  a           -      Accagaa     gacaaga   a 

Annotation confidence Not enough data

Genome context

chr5: 170570425-170570532 [+]

Mature ptr-miR-378e

• Accession: MIMAT0024067
• Description: Pan troglodytes ptr-miR-378e mature miRNA
• Sequence: 71 - ACUGGACUUGGAGUCAGG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116