miRBase entry: ptr-mir-4423

Stem-loop ptr-mir-4423


Accession
MI0020615
Description
Pan troglodytes ptr-mir-4423 precursor miRNA
Gene family
MIPF0001587; mir-4423


Sequence

cucacaccaucaggugccugacaucauguacugcaguugccuuuuuguucccaugcuguuuaagcccagcAUAGGCACCAAAAAGCAACAAcaguauaugaaacugagaca
((((((((....)))).......((((((((((..(((((.((((((...((((((((........)))))).))...)))))))))))..))))))))))...))))...

Structure
---    caccaucaggugccugaca          ca     c      uuc  -      uuu 
   cuca                   ucauguacug  guugc uuuuug   cc augcug   a
   ||||                   ||||||||||  ||||| ||||||   || ||||||    
   gagu                   aguauaugac  CAACG AAAAAC   GG UAcgac   a
aca    ----------------caa          AA     -      CAC  A      ccg 


Annotation confidence Not enough data
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Genome context
chr1: 85560703-85560813 [+]

Database links

Mature ptr-miR-4423

Accession MIMAT0024068
Description Pan troglodytes ptr-miR-4423 mature miRNA
Sequence 71 - AUAGGCACCAAAAAGCAACAA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116