miRBase entry: ptr-mir-4428

Stem-loop ptr-mir-4428


Accession
MI0020616
Description
Pan troglodytes ptr-mir-4428 precursor miRNA
Gene family
MIPF0001630; mir-4428


Sequence

aaucuuaugcaaacgggcuuuccacuuggcaggugccauguugccugcuccuuacuguacacguggcuggCAAGGAGACGGGAACAUGGAGCCgccauuuugaacaugccuag
..............((((.(((....((((.(((.(((((((.((((((((((.((((.......)).)).)))))).))))))))))).)))))))....)))...))))..

Structure
aaucuuaugcaaac    --u   cacu    a   g       g    -      a  -  ac 
              gggc   uuc    uggc ggu ccauguu ccug cuccuu cu gu  a
              ||||   |||    |||| ||| ||||||| |||| |||||| || ||  c
              uccg   aag    accg CCG GGUACAA GGGC GAGGAA gg cg  g
------------ga    uac   uuuu    -   A       -    A      C  u  gu 


Annotation confidence Not enough data
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Genome context
chr1: 216588554-216588666 [+]

Database links

Mature ptr-miR-4428

Accession MIMAT0024069
Description Pan troglodytes ptr-miR-4428 mature miRNA
Sequence 71 - CAAGGAGACGGGAACAUGGAGCC - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116