miRBase entry: ptr-mir-449c

Stem-loop ptr-mir-449c


Accession
MI0020618
Description
Pan troglodytes ptr-mir-449c precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

aaagcugggaugugucagguAGGCAGUGUAUUGCUAGCGGCUGUuaauaauuuuaacaguugcuaguugcacuccucucuguugcauucagaagcacgccccccaaagaaa
...(((.((((((..((((.(((.((((((..(((((((((((((((.....)))))))))))))))))))))))).))))..))))))...)))................

Structure
-------------aaa   --g      gu    u   C      UU               u 
                gcu   ggaugu  cagg AGG AGUGUA  GCUAGCGGCUGUuaa a
                |||   ||||||  |||| ||| ||||||  ||||||||||||||| a
                cga   cuuacg  gucu ucc ucacgu  ugaucguugacaauu u
aaagaaaccccccgca   aga      uu    c   -      --               u 


Annotation confidence Not enough data
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Genome context
chr5: 59472899-59473009 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-449c

Accession MIMAT0024071
Description Pan troglodytes ptr-miR-449c mature miRNA
Sequence 21 - AGGCAGUGUAUUGCUAGCGGCUGU - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116