miRBase entry: ggo-mir-29c

Stem-loop ggo-mir-29c

Accession

MI0020631

Description

Gorilla gorilla ggo-mir-29c precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

gggagcaccacuggcccaucucuuacacaggcugaccgauuucuccugguguucagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguagggggaaaagcag
((.....)).(((.....(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))).....)))

Structure

gggagcacca   gccca         -  ggc           ucc       c   gucu 
          cug     ucucuuaca ca   ugaccgauuuc   ugguguu aga    g
          |||     ||||||||| ||   |||||||||||   ||||||| |||    u
          gac     gggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
----------   gaaaa         a  ---           UUU       -   guuu

Annotation confidence Not enough data

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Genome context

chr1: 187601536-187601647 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-29c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-29c

Accession	MIMAT0024084
Description	Gorilla gorilla ggo-miR-29c mature miRNA
Sequence	71 - UAGCACCAUUUGAAAUCGGUUA - 92
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116