miRBase entry: ggo-mir-379

Stem-loop ggo-mir-379


Accession
MI0020657
Description
Gorilla gorilla ggo-mir-379 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

uuccgugguuccugaagagaUGGUAGACUAUGGAACGUAGGcguuaugauuucugaccuauguaacaugguccacuaacucucaguauccaauccauccucggagggcu
((((((((...((((.(((.((((.(((((((..(((((((((..........)).)))))))..))))))).)))).)))))))...))).........)))))....

Structure
----     ---------   uuc    a   a    A       GA       -  uuau 
    uuccg         ugg   cuga gag UGGU GACUAUG  ACGUAGG cg    g
    |||||         |||   |||| ||| |||| |||||||  ||||||| ||     
    gaggc         acc   gacu cuc auca cugguac  uguaucc gu    a
ucgg     uccuaccua   uau    -   a    c       aa       a  cuuu 


Annotation confidence Not enough data
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Genome context
chr14: 85045381-85045489 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ggo-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-379

Accession MIMAT0024110
Description Gorilla gorilla ggo-miR-379 mature miRNA
Sequence 21 - UGGUAGACUAUGGAACGUAGG - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116