miRBase entry: ggo-mir-889

Stem-loop ggo-mir-889


Accession
MI0020662
Description
Gorilla gorilla ggo-mir-889 precursor miRNA
Gene family
MIPF0000514; mir-889


Sequence

uucuugauggcacaguucuuuggugcuuaaagaauggcuguccguaguauggucucuauauuuaugaugaUUAAUAUCGGACAACCAUUGuuuuaguauccaaauuugcu
........((((.((((...(((((((.(((.(((((.((((((..((.(((((((.........)).)))))))..)))))).))))).))).)))).)))))))))))

Structure
uucuugau    c    cuu   -    u   g     c      ua  a     -  uau 
        ggca aguu   ugg ugcu aaa aaugg uguccg  gu ugguc uc   a
        |||| ||||   ||| |||| ||| ||||| ||||||  || ||||| ||   u
        ucgu uuaa   acc auga uuu UUACC ACAGGC  UA AUUag ag   u
--------    -    ---   u    u   G     A      UA  -     u  uau 


Annotation confidence Not enough data
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Genome context
chr14: 85070907-85071016 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ggo-mir-889
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-889

Accession MIMAT0024115
Description Gorilla gorilla ggo-miR-889 mature miRNA
Sequence 71 - UUAAUAUCGGACAACCAUUG - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116