Stem-loop ggo-mir-338

Accession

MI0020672

Description

Gorilla gorilla ggo-mir-338 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

cgucagccccagacgccgcacggcuguccucuccaacaauauccuggugcugagugaugacucaggcgacUCCAGCAUCAGUGAUUUUGUUGAagagggcagcugccag
((((.......)))).....((((((((((((.((((((.(((((((((((((((.............))).))))))))).))).)))))).))))))))))))....

Structure

cgucagccccagacgccgca            c      u   -         -   gauga 
                    cggcuguccucu caacaa auc cuggugcug agu     c
                    |||||||||||| |||||| ||| ||||||||| |||     u
                    gucgacgggaga GUUGUU UAG GACUACGAC Uca     c
----------------gacc            A      U   U         C   gcgga 

Annotation confidence Not enough data

Genome context

chr5: 1923676-1923784 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-338

Mature ggo-miR-338

• Accession: MIMAT0024125
• Description: Gorilla gorilla ggo-miR-338 mature miRNA
• Sequence: 71 - UCCAGCAUCAGUGAUUUUGUUGA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116