miRBase entry: ggo-mir-487a

Stem-loop ggo-mir-487a


Accession
MI0020692
Description
Gorilla gorilla ggo-mir-487a precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

ugggccgucaccgucagccuucgguacuugaagagugguuaucccugcuguguucgcuuaauuuaugacgAAUCAUACAGGGACAUCCAGUuuuucaguaucaaauacug
.((((.(.......).))))..((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).))))))........

Structure
ugggccgucaccgucagccuuc      u     g   uua      c    -    - uua 
                      gguacu gaaga ugg   ucccug ugug uucg c   a
                      |||||| ||||| |||   |||||| |||| |||| |   u
                      cuauga uuuuU ACC   AGGGAC AUAC AAgc g   u
--------------gucauaaa      c     G   UAC      -    U    a uau 


Annotation confidence Not enough data
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Genome context
chr14: 85075456-85075565 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ggo-mir-487a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-487a

Accession MIMAT0024145
Description Gorilla gorilla ggo-miR-487a mature miRNA
Sequence 71 - AAUCAUACAGGGACAUCCAGU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116