miRBase entry: ggo-mir-543

Stem-loop ggo-mir-543

Accession

MI0020694

Description

Gorilla gorilla ggo-mir-543 precursor miRNA

Gene family

MIPF0000110; mir-329

Sequence

guugucaacggugcugacgugcgguacuuaaugagaaguugcccguguuuuuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUuuuucaguauccuauuc
(((((((.......))))).))((((((.((.(((((((.(((((((..(.((((((.........).))))).)..))))).))))))))).)).))))))......

Structure

guugucaacggugcugacgugc      u  u       u  -     uu u     - uuu 
                      gguacu aa gagaagu gc ccgug  u uuucg c   a
                      |||||| || ||||||| || |||||  | ||||| |   u
                      cuauga uu uUCUUCA CG GGCGC  A AAAgc g   u
----------------cuuauc      c  u       -  U     UU C     a ugu

Annotation confidence Not enough data

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Genome context

chr14: 85055309-85055416 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ggo-mir-543

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-543

Accession	MIMAT0024147
Description	Gorilla gorilla ggo-miR-543 mature miRNA
Sequence	71 - AAACAUUCGCGGUGCACUUCU - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116